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GOAPhAR integrates information from different sources for Gene Annotation, Protein Annotation, Protein Interactions, Gene Ontology and Biological Pathways. Each of the categories consist of links that point to open access databases (Genbank,Swissprot) and applications such as GeneCards and IHOP that provide additional annotation. |
| The source of annotation is provided below |
| Gene Identifiers |
Genbank, Affymetrix, Unigene, Ensemble, Gene Reference Sequence Identifiers |
| Gene Annotation/Gene Title/Gene Symbol |
NetAFFX |
| Gene Homologous Sequences |
NCBI-Homologene |
| Gene Chromosome Location |
Ensemble |
| Gene Microarray Datasets |
NCBI-GEO Profiles |
| Gene Annotation Resources |
GeneCards |
| Protein Identifiers |
Swissprot, Protein Reference Sequence Identifiers |
| Protein Domains |
ProDom |
| Protein Families |
Pfam |
| Protein Structures |
MODBASE |
| Protein Interaction Information |
IHOP |
| Protein Interactions |
PreBind |
| Gene Ontology |
Affymetrix-NetAFFX, QuickGO, EP:GO |
| Biological Pathways |
KEGG, Biocarta, GenMAPP, SPAD, CellML, Panther. |
| Statistical Cluster Validity Indices |
Davies-Bouldin Index, Dunn's Index, Silhouette Index |
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| GOAPhAR Information Page |
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